Remote Approach-6: Using CUAHSI JupyterHub for the reproducibility of SUMMA modeling


Authors:
Owners:
Resource type: Composite Resource
Storage: The size of this resource is 1.8 MB
Created: Nov 16, 2020 at 12:14 a.m.
Last updated: Nov 03, 2021 at 3:07 p.m.
Citation: See how to cite this resource
Sharing Status: Public
Views: 133
Downloads: 8
+1 Votes: Be the first one to 
 this.
Comments: No comments (yet)

Abstract

This HydroShare resource provides the Jupyter Notebooks for the reproducibility of SUMMA modeling using CUAHSI JupyterHub in the manuscript of "Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems" in Environmental Modeling and Software.

To find out the instructions on how to run Jupyter Notebooks, please refer to the README file which is provided in this resource.

Subject Keywords

Deleting all keywords will set the resource sharing status to private.

Resource Level Coverage

Spatial

Coordinate System/Geographic Projection:
WGS 84 EPSG:4326
Coordinate Units:
Decimal degrees
Place/Area Name:
Aspen stand at Reynolds Mountain East catchment in southwestern Idaho
North Latitude
43.0707°
East Longitude
-116.7495°
South Latitude
43.0630°
West Longitude
-116.7592°

Content

Readme.md

How to run the Jupyter notebooks for the reproducibility of SUMMA modeling

This Readme file provides the users with the step-by-step guide to successfully run the three developed notebooks.
The steps, in the order they need to be taken, are explained in what follows.

STEP 0: Preliminary step

In this step the researchers make sure that they have access to the content files of the resource and required compute platform.
- In order to be able to run the three Jupyter notebooks, researchers need to first have a HydroShare account.
- If the researchers do not have access to CUAHSI JupyterHub (CJH), they need to submit an access request to CUAHSI JupyterHub.

  • To run this notebook:
    1. Click the OpenWith button in the upper-right corner of this HydroShare resource webpage;
    2. Select "CUAHSI JupyterHub";
    3. Open the notebook and follow instructions;

STEP 1: Execute 'Creating_pySUMMA_conda_virtual_environment_in_CUAHSI_JupyterHub.ipynb' using CJH

In this notebook, users first run the notebook to create pySUMMA virtual environments in CJH.

STEP 2: Execute 'Quantitative_Performance_Test_Computational_Time_of_SUMMA_Simulation_and_Reproducibility_of_Figure_7_and_8_of_Clark_et_al.ipynb' in CJH

In this step, users run the notebook for quantitative performance test of computational time and reprouduce figure 7 and 8 in Clark et al.,(2015b) through SUMMA simulation.

STEP 3: Execute 'Quantitative_Performance_Test_Computational_Time_of_SUMMA_Simulation_and_Reproducibility_of_Figure_9_of_Clark_et_al.ipynb' in CJH

In this step, users run the notebook for quantitative performance test of computational time and reprouduce figure 9 in Clark et al.,(2015b) through SUMMA simulation.

References

This resource belongs to the following collections:
Title Owners Sharing Status My Permission
Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems Young-Don Choi · Binata Roy · Iman Maghami  Public &  Shareable Open Access

Credits

Funding Agencies

This resource was created using funding from the following sources:
Agency Name Award Title Award Number
National Science Foundation EarthCube Data Capabilities: Collaborative Research: Integration of Reproducibility into Community CyberInfrastructure ICER-1928369, ICER-1928315

How to Cite

Choi, Y. (2021). Remote Approach-6: Using CUAHSI JupyterHub for the reproducibility of SUMMA modeling, HydroShare, http://www.hydroshare.org/resource/83c29513daa74c7e8561732d55819713

This resource is shared under the Creative Commons Attribution CC BY.

 http://creativecommons.org/licenses/by/4.0/
CC-BY

Comments

There are currently no comments

New Comment

required